/EXTERNAL McGill EMC/mapping_coverage/K006213_1_lane_gembs
BACK
SAMPLE K006213_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1503448741 |
100% |
173220349321 |
100% |
| Mapped |
1476890675 |
98.23 % |
169586107759 |
97.90 % |
| Passed |
630440191 |
41.93 % |
55631662667 |
32.12 % |
| NotPassed |
846450484 |
56.30 % |
113954445092 |
65.79 % |
| |
|
|
|
|
| LowMAPQ |
576470194 |
38.34 % |
78931248066 |
45.57 % |
| MateUnmapped |
26558066 |
1.77 % |
3634241562 |
2.10 % |
| Duplicate |
238120477 |
15.84 % |
30808583067 |
17.79 % |
| BadOrientation |
1058 |
0.00 % |
141870 |
0.00 % |
| LargeInsertSize |
1401030 |
0.09 % |
187988974 |
0.11 % |
| |
|
|
|
|
| NotCorrectlyAligned |
30457725 |
2.03 % |
4026483115 |
2.32 % |
| Unmapped |
26558066 |
1.77 % |
3634241562 |
2.10 % |
Base Level Counts
| Bases |
# |
% |
| Total |
84574930488 |
100% |
| Passed |
52530366916 |
62.11 % |
| Trimmed |
2482569069 |
2.94 % |
| Clipped |
478736503 |
0.57 % |
| Overlapping |
28464531318 |
33.66 % |
| LowQuality |
618726682 |
0.73 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |