/EXTERNAL McGill EMC/methylation/K006213_1_lane_gembs

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SAMPLE K006213_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26918438 21115214 78.44 %
NonRefCpG 353186 164905 46.69 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006213_1_lane_gembs_coverage_refCpG.png ./IMG//K006213_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006213_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006213_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006213_1_lane_gembs_quality_refcpg.png ./IMG//K006213_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006213_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6413781 12.19 % 4968509 10.96 % 158531 23.81 % 43939 10.44 %
Intermediate (0.3-0.7) 11201352 21.30 % 8447683 18.63 % 160331 24.09 % 91673 21.79 %
Methylated (0.7-1) 34979978 66.51 % 31922238 70.41 % 346820 52.10 % 285182 67.77 %
Median Methylation 0.820 0.840 0.720 0.820