/EXTERNAL McGill EMC/K006214_1_lane_gembs

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SAMPLE K006214_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1219280102 100.00 % 609640051 100.00 % 609640051 100.00 %
General Reads 1196605444 98.14 % 599812023 98.39 % 596793421 97.89 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 15137 0.00 % 7587 0.00 % 7550 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 22659521 1.86 % 9820441 1.61 % 12839080 2.11 %
Bisulfite_reads C2T 609545332 49.99 % 305512847 50.11 % 304032485 49.87 %
Bisulfite_reads G2A 587075249 48.15 % 294306763 48.28 % 292768486 48.02 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 506922088
Average Unique 83.15 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 48091960578 39.05 % 19157951294 31.11 % 28934009284 46.99 %
Base Counts Overall C 12992605433 10.55 % 674725036 1.10 % 12317880397 20.01 %
Base Counts Overall G 13020889172 10.57 % 12386089081 20.12 % 634800091 1.03 %
Base Counts Overall T 47760974729 38.78 % 28727222885 46.66 % 19033751844 30.91 %
Base Counts Overall N 1280860390 1.04 % 627656855 1.02 % 653203535 1.06 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9896576230505103
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 572815172



Mapping Quality

Mapping Quality Histogram
K006214_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006214_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0482.Bisulfite-Seq.DNA_Methylation.EGAX00001425451.release_6