/EXTERNAL McGill EMC/methylation/K006214_1_lane_gembs

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SAMPLE K006214_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26474727 21477226 81.12 %
NonRefCpG 146448 81021 55.32 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006214_1_lane_gembs_coverage_refCpG.png ./IMG//K006214_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006214_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006214_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006214_1_lane_gembs_quality_refcpg.png ./IMG//K006214_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006214_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5687115 10.92 % 3272115 7.22 % 31551 11.65 % 8001 4.31 %
Intermediate (0.3-0.7) 10410978 19.99 % 8358524 18.44 % 64480 23.82 % 35584 19.16 %
Methylated (0.7-1) 35971397 69.08 % 33689717 74.34 % 174709 64.53 % 142130 76.53 %
Median Methylation 0.830 0.850 0.800 0.850