/EXTERNAL McGill EMC/K006215_1_lane_gembs

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SAMPLE K006215_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 950215944 100.00 % 475107972 100.00 % 475107972 100.00 %
General Reads 930751877 97.95 % 466584863 98.21 % 464167014 97.70 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 18866 0.00 % 9451 0.00 % 9415 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 19445201 2.05 % 8513658 1.79 % 10931543 2.30 %
Bisulfite_reads C2T 475411941 50.03 % 238309342 50.16 % 237102599 49.90 %
Bisulfite_reads G2A 455358802 47.92 % 228284972 48.05 % 227073830 47.79 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 387358091
Average Unique 81.53 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 37651299361 39.23 % 15153063706 31.58 % 22498235655 46.89 %
Base Counts Overall C 9958173090 10.38 % 514086615 1.07 % 9444086475 19.68 %
Base Counts Overall G 10000160284 10.42 % 9511531858 19.82 % 488628426 1.02 %
Base Counts Overall T 37390447850 38.96 % 22323998757 46.52 % 15066449093 31.40 %
Base Counts Overall N 971729759 1.01 % 483224236 1.01 % 488505523 1.02 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9921582821193533
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 440058810



Mapping Quality

Mapping Quality Histogram
K006215_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006215_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0477.Bisulfite-Seq.DNA_Methylation.EGAX00001425407.release_6