/EXTERNAL McGill EMC/mapping_coverage/K006215_1_lane_gembs
BACK
SAMPLE K006215_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
916804035 |
100% |
78897227728 |
100% |
| Mapped |
909745066 |
99.23 % |
78191330828 |
99.11 % |
| Passed |
752105756 |
82.04 % |
62427399828 |
79.12 % |
| NotPassed |
157639310 |
17.19 % |
15763931000 |
19.98 % |
| |
|
|
|
|
| LowMAPQ |
111766228 |
12.19 % |
11176622800 |
14.17 % |
| MateUnmapped |
7058969 |
0.77 % |
705896900 |
0.89 % |
| Duplicate |
14002410 |
1.53 % |
1400241000 |
1.77 % |
| BadOrientation |
80 |
0.00 % |
8000 |
0.00 % |
| LargeInsertSize |
155104 |
0.02 % |
15510400 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
31715488 |
3.46 % |
3171548800 |
4.02 % |
| Unmapped |
7058969 |
0.77 % |
705896900 |
0.89 % |
Base Level Counts
| Bases |
# |
% |
| Total |
75205447500 |
100% |
| Passed |
58485363878 |
77.77 % |
| Trimmed |
3263754533 |
4.34 % |
| Clipped |
75453159 |
0.10 % |
| Overlapping |
12702594513 |
16.89 % |
| LowQuality |
678281417 |
0.90 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |