/EXTERNAL McGill EMC/methylation/K006215_1_lane_gembs

BACK

SAMPLE K006215_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26378517 17661359 66.95 %
NonRefCpG 169215 78199 46.21 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006215_1_lane_gembs_coverage_refCpG.png ./IMG//K006215_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006215_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006215_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006215_1_lane_gembs_quality_refcpg.png ./IMG//K006215_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006215_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5595021 10.87 % 2047574 5.27 % 43206 13.73 % 8264 4.38 %
Intermediate (0.3-0.7) 11918680 23.16 % 7689690 19.80 % 82898 26.34 % 39004 20.65 %
Methylated (0.7-1) 33941568 65.96 % 29094293 74.92 % 188637 59.93 % 141614 74.97 %
Median Methylation 0.810 0.840 0.770 0.840