/EXTERNAL McGill EMC/K006217_1_lane_gembs

BACK

SAMPLE K006217_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 2385554684 100.00 % 1192777342 100.00 % 1192777342 100.00 %
General Reads 2028556825 85.04 % 1023548891 85.81 % 1005007934 84.26 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 47759 0.00 % 23963 0.00 % 23796 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 356950100 14.96 % 169204488 14.19 % 187745612 15.74 %
Bisulfite_reads C2T 1030536213 43.20 % 519954031 43.59 % 510582182 42.81 %
Bisulfite_reads G2A 998068371 41.84 % 503618823 42.22 % 494449548 41.45 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 774941572
Average Unique 64.97 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 117137583839 36.88 % 46464712292 29.26 % 70672871547 44.50 %
Base Counts Overall C 39935240792 12.57 % 6793406299 4.28 % 33141834493 20.87 %
Base Counts Overall G 41222528036 12.98 % 33108403622 20.85 % 8114124414 5.11 %
Base Counts Overall T 116837562530 36.79 % 71224490794 44.85 % 45613071736 28.72 %
Base Counts Overall N 2470887603 0.78 % 1210888393 0.76 % 1259999210 0.79 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.887103186895651
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 885660353



Mapping Quality

Mapping Quality Histogram
K006217_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006217_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0402.Bisulfite-Seq.DNA_Methylation.EGAX00001425338.release_6