/EXTERNAL McGill EMC/mapping_coverage/K006217_1_lane_gembs
BACK
SAMPLE K006217_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1961865067 |
100% |
209030544828 |
100% |
| Mapped |
1928821970 |
98.32 % |
204788835467 |
97.97 % |
| Passed |
1425498553 |
72.66 % |
138295899558 |
66.16 % |
| NotPassed |
503323417 |
25.66 % |
66492935909 |
31.81 % |
| |
|
|
|
|
| LowMAPQ |
378065340 |
19.27 % |
50446563686 |
24.13 % |
| MateUnmapped |
33043097 |
1.68 % |
4241709361 |
2.03 % |
| Duplicate |
67969421 |
3.46 % |
8767885908 |
4.19 % |
| BadOrientation |
636 |
0.00 % |
73686 |
0.00 % |
| LargeInsertSize |
475676 |
0.02 % |
64996376 |
0.03 % |
| |
|
|
|
|
| NotCorrectlyAligned |
56812344 |
2.90 % |
7213416253 |
3.45 % |
| Unmapped |
33043097 |
1.68 % |
4241709361 |
2.03 % |
Base Level Counts
| Bases |
# |
% |
| Total |
184376354896 |
100% |
| Passed |
130897816814 |
70.99 % |
| Trimmed |
5816263829 |
3.15 % |
| Clipped |
572885818 |
0.31 % |
| Overlapping |
45507569520 |
24.68 % |
| LowQuality |
1581818915 |
0.86 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |