/EXTERNAL McGill EMC/methylation/K006217_1_lane_gembs

BACK

SAMPLE K006217_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 27169660 25138973 92.53 %
NonRefCpG 262950 207306 78.84 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006217_1_lane_gembs_coverage_refCpG.png ./IMG//K006217_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006217_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006217_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006217_1_lane_gembs_quality_refcpg.png ./IMG//K006217_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006217_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5911158 10.98 % 5361790 10.49 % 36114 7.21 % 16677 3.92 %
Intermediate (0.3-0.7) 9533612 17.72 % 8704896 17.03 % 96402 19.26 % 72781 17.12 %
Methylated (0.7-1) 38367745 71.30 % 37058496 72.49 % 368062 73.53 % 335561 78.95 %
Median Methylation 0.840 0.840 0.840 0.860