/EXTERNAL McGill EMC/K006218_1_lane_gembs

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SAMPLE K006218_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1120187266 100.00 % 560093633 100.00 % 560093633 100.00 %
General Reads 1093041110 97.58 % 547811314 97.81 % 545229796 97.35 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 377157 0.03 % 189032 0.03 % 188125 0.03 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 26768999 2.39 % 12093287 2.16 % 14675712 2.62 %
Bisulfite_reads C2T 558013636 49.81 % 279661727 49.93 % 278351909 49.70 %
Bisulfite_reads G2A 535404631 47.80 % 268338619 47.91 % 267066012 47.68 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 445791355
Average Unique 79.59 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 44128476775 39.00 % 18218657104 32.21 % 25909819671 45.80 %
Base Counts Overall C 11972111547 10.58 % 724773512 1.28 % 11247338035 19.88 %
Base Counts Overall G 12217240627 10.80 % 11389454262 20.13 % 827786365 1.46 %
Base Counts Overall T 43675707239 38.60 % 25669644835 45.38 % 18006062404 31.83 %
Base Counts Overall N 1145377678 1.01 % 566927220 1.00 % 578450458 1.02 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9785083763158058
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 510266960



Mapping Quality

Mapping Quality Histogram
K006218_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006218_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0124.Bisulfite-Seq.DNA_Methylation.EGAX00001425221.release_6