/EXTERNAL McGill EMC/K006218_1_lane_gembs/McGill0124.Bisulfite-Seq.DNA_Methylation.EGAX00001425221.release_6

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SAMPLE K006218_1_lane_gembs LANE McGill0124.Bisulfite-Seq.DNA_Methylation.EGAX00001425221.release_6

Mapping Stats (Reads)

Concept	Total Reads	%	Pair One Reads	%	Pair Two Reads	%
Sequenced Reads	1120187266	100.00 %	560093633	100.00 %	560093633	100.00 %
General Reads	1093041110	97.58 %	547811314	97.81 %	545229796	97.35 %
Reads in Control sequences	0	0.00 %	0	0.00 %	0	0.00 %
Reads under conversion control	377157	0.03 %	189032	0.03 %	188125	0.03 %
Reads over conversion control	0	0.00 %	0	0.00 %	0	0.00 %
Unmapped reads	26768999	2.39 %	12093287	2.16 %	14675712	2.62 %
Bisulfite_reads C2T	558013636	49.81 %	279661727	49.93 %	278351909	49.70 %
Bisulfite_reads G2A	535404631	47.80 %	268338619	47.91 %	267066012	47.68 %

Uniqueness (Fragments)

Concept	Value
Unique Fragments	445791355
Average Unique	79.59 %

Mapping Stats (Bases)

Concept	Total Bases	%	Pair One Bases	%	Pair Two Bases	%
Base Counts Overall A	44128476775	39.00 %	18218657104	32.21 %	25909819671	45.80 %
Base Counts Overall C	11972111547	10.58 %	724773512	1.28 %	11247338035	19.88 %
Base Counts Overall G	12217240627	10.80 %	11389454262	20.13 %	827786365	1.46 %
Base Counts Overall T	43675707239	38.60 %	25669644835	45.38 %	18006062404	31.83 %
Base Counts Overall N	1145377678	1.01 %	566927220	1.00 %	578450458	1.02 %

Bisulfite Conversion Rate

Bisulfite Conversion Type	Conversion Rate
Conversion Rate	0.9785083763158058
Over Conversion Rate	NA

Correct Pairs

Concept	Total Reads
Correct Pairs	510266960

Mapping Quality

Mapping Quality Histogram

Read Length

Read Length	Reads
100	560093633
100	560093633

Insert Size Plot

Insert Size Histogram