/EXTERNAL McGill EMC/mapping_coverage/K006218_1_lane_gembs
BACK
SAMPLE K006218_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1085165858 |
100% |
97906144598 |
100% |
| Mapped |
1074610412 |
99.03 % |
96850599998 |
98.92 % |
| Passed |
882142418 |
81.29 % |
77603800598 |
79.26 % |
| NotPassed |
192467994 |
17.74 % |
19246799400 |
19.66 % |
| |
|
|
|
|
| LowMAPQ |
173136704 |
15.95 % |
17313670400 |
17.68 % |
| MateUnmapped |
10555446 |
0.97 % |
1055544600 |
1.08 % |
| Duplicate |
7976998 |
0.74 % |
797699800 |
0.81 % |
| BadOrientation |
122 |
0.00 % |
12200 |
0.00 % |
| LargeInsertSize |
171986 |
0.02 % |
17198600 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
11182184 |
1.03 % |
1118218400 |
1.14 % |
| Unmapped |
10555446 |
0.97 % |
1055544600 |
1.08 % |
Base Level Counts
| Bases |
# |
% |
| Total |
88190480800 |
100% |
| Passed |
72344876786 |
82.03 % |
| Trimmed |
3962914249 |
4.49 % |
| Clipped |
143040099 |
0.16 % |
| Overlapping |
10443640103 |
11.84 % |
| LowQuality |
1296009563 |
1.47 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |