/EXTERNAL McGill EMC/methylation/K006218_1_lane_gembs

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SAMPLE K006218_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26613151 20011587 75.19 %
NonRefCpG 261414 167902 64.23 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006218_1_lane_gembs_coverage_refCpG.png ./IMG//K006218_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006218_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006218_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006218_1_lane_gembs_quality_refcpg.png ./IMG//K006218_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006218_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6137105 11.75 % 3141386 7.26 % 53282 10.79 % 20603 5.56 %
Intermediate (0.3-0.7) 12871021 24.64 % 9787619 22.62 % 132722 26.88 % 88185 23.80 %
Methylated (0.7-1) 33224758 63.61 % 30346229 70.12 % 307751 62.33 % 261677 70.63 %
Median Methylation 0.800 0.830 0.790 0.830