/EXTERNAL McGill EMC/K006220_1_lane_gembs

BACK

SAMPLE K006220_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1268861022 100.00 % 634430511 100.00 % 634430511 100.00 %
General Reads 1244809236 98.10 % 624013026 98.36 % 620796210 97.85 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 19997 0.00 % 10017 0.00 % 9980 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 24031789 1.89 % 10407468 1.64 % 13624321 2.15 %
Bisulfite_reads C2T 634967423 50.04 % 318274435 50.17 % 316692988 49.92 %
Bisulfite_reads G2A 609861810 48.06 % 305748608 48.19 % 304113202 47.93 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 510498802
Average Unique 80.47 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 50125709246 39.11 % 20006571770 31.22 % 30119137476 47.00 %
Base Counts Overall C 13455992028 10.50 % 716377783 1.12 % 12739614245 19.88 %
Base Counts Overall G 13513987160 10.55 % 12822987749 20.01 % 690999411 1.08 %
Base Counts Overall T 49753237565 38.82 % 29883184505 46.64 % 19870053060 31.01 %
Base Counts Overall N 1306037223 1.02 % 648359804 1.01 % 657677419 1.03 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9906701957847333
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 580381728



Mapping Quality

Mapping Quality Histogram
K006220_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006220_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0480.Bisulfite-Seq.DNA_Methylation.EGAX00001425434.release_6