/EXTERNAL McGill EMC/mapping_coverage/K006220_1_lane_gembs
BACK
SAMPLE K006220_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1224442093 |
100% |
101741907964 |
100% |
| Mapped |
1215570534 |
99.28 % |
100854752064 |
99.13 % |
| Passed |
988173027 |
80.70 % |
78115001364 |
76.78 % |
| NotPassed |
227397507 |
18.57 % |
22739750700 |
22.35 % |
| |
|
|
|
|
| LowMAPQ |
160563622 |
13.11 % |
16056362200 |
15.78 % |
| MateUnmapped |
8871559 |
0.72 % |
887155900 |
0.87 % |
| Duplicate |
20525298 |
1.68 % |
2052529800 |
2.02 % |
| BadOrientation |
98 |
0.00 % |
9800 |
0.00 % |
| LargeInsertSize |
235656 |
0.02 % |
23565600 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
46072833 |
3.76 % |
4607283300 |
4.53 % |
| Unmapped |
8871559 |
0.72 % |
887155900 |
0.87 % |
Base Level Counts
| Bases |
# |
% |
| Total |
98811060000 |
100% |
| Passed |
73127288389 |
74.01 % |
| Trimmed |
4228211751 |
4.28 % |
| Clipped |
103466037 |
0.10 % |
| Overlapping |
20592592599 |
20.84 % |
| LowQuality |
759501224 |
0.77 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |