/EXTERNAL McGill EMC/methylation/K006220_1_lane_gembs

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SAMPLE K006220_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26442938 21019688 79.49 %
NonRefCpG 144127 78855 54.71 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006220_1_lane_gembs_coverage_refCpG.png ./IMG//K006220_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006220_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006220_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006220_1_lane_gembs_quality_refcpg.png ./IMG//K006220_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006220_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5651234 10.87 % 3226659 7.22 % 29606 11.09 % 7530 4.15 %
Intermediate (0.3-0.7) 10816659 20.81 % 8571454 19.18 % 65286 24.46 % 36147 19.91 %
Methylated (0.7-1) 35520880 68.32 % 32882349 73.59 % 172003 64.45 % 137920 75.95 %
Median Methylation 0.820 0.840 0.800 0.840