{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 35318740, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 34882149, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.76, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 72359114, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 71394229, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.67, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 28432456, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 3012252, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.105944
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 57730437, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 21008010, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.363898
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 28431677, 
            "distinct_read_pairs": 25427723, 
            "one_read_pair": 22724124, 
            "two_read_pair": 2447912, 
            "NRF": 0.894345, 
            "PBC1": 0.893675, 
            "PBC2": 9.283064
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 57704316, 
            "distinct_read_pairs": 37254763, 
            "one_read_pair": 24411426, 
            "two_read_pair": 8158322, 
            "NRF": 0.645615, 
            "PBC1": 0.655257, 
            "PBC2": 2.992212
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 25420204, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 25420204, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 36722427, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 36722427, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 30893, 
        "Np": 0, 
        "N_opt": 30893, 
        "N_consv": 30893, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 240, 
            "corr_est_frag_len": 0.1757791338395, 
            "phantom_peak": 45, 
            "corr_phantom_peak": 0.1807035, 
            "argmin_corr": 1500, 
            "min_corr": 0.1616026, 
            "NSC": 1.087725, 
            "RSC": 0.7421932
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.136561503264
        }, 
        "rep1-pr1": {
            "FRiP": 0.124900775081
        }, 
        "rep1-pr2": {
            "FRiP": 0.124934066418
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.10897750591
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.259960041297, 
            "auc": 0.489364840928, 
            "ch_div": 0.14609315958, 
            "elbow_pt": 6.12966934994e-75, 
            "jsd": 0.630532574664, 
            "syn_auc": 0.5183133682, 
            "syn_elbow_pt": 0.149911310174, 
            "syn_jsd": 0.285229846493
        }
    ]
}
