{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 25609634, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 25337644, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.94, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 72359114, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 71394229, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.67, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 20837835, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 1395942, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.066991
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 57730437, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 21008010, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.363898
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 20836832, 
            "distinct_read_pairs": 19444792, 
            "one_read_pair": 18173315, 
            "two_read_pair": 1174124, 
            "NRF": 0.933193, 
            "PBC1": 0.934611, 
            "PBC2": 15.478191
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 57704316, 
            "distinct_read_pairs": 37254763, 
            "one_read_pair": 24411426, 
            "two_read_pair": 8158322, 
            "NRF": 0.645615, 
            "PBC1": 0.655257, 
            "PBC2": 2.992212
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 19441893, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 19441893, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 36722427, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 36722427, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 26539, 
        "Np": 0, 
        "N_opt": 26539, 
        "N_consv": 26539, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 235, 
            "corr_est_frag_len": 0.215707622043657, 
            "phantom_peak": 45, 
            "corr_phantom_peak": 0.2076084, 
            "argmin_corr": 1500, 
            "min_corr": 0.1656408, 
            "NSC": 1.302261, 
            "RSC": 1.192988
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.208033682678
        }, 
        "rep1-pr1": {
            "FRiP": 0.192007683566
        }, 
        "rep1-pr2": {
            "FRiP": 0.192226499786
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.184373034435
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.224450926067, 
            "auc": 0.487827148877, 
            "ch_div": 0.185241535945, 
            "elbow_pt": 5.73531411079e-57, 
            "jsd": 0.683574116208, 
            "syn_auc": 0.508869591218, 
            "syn_elbow_pt": 0.232585494359, 
            "syn_jsd": 0.339903296051
        }
    ]
}
