/EXTERNAL BLUEPRINT/K011722_1_lane_gembs

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SAMPLE K011722_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 100453766 100.00 % 50226883 100.00 % 50226883 100.00 %
General Reads 96221749 95.79 % 48358399 96.28 % 47863350 95.29 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1 0.00 % 1 0.00 % 0 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 4232016 4.21 % 1868483 3.72 % 2363533 4.71 %
Bisulfite_reads C2T 49799509 49.57 % 25022247 49.82 % 24777262 49.33 %
Bisulfite_reads G2A 46422241 46.21 % 23336153 46.46 % 23086088 45.96 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 36425675
Average Unique 72.52 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 2754269620 35.61 % 1058617527 27.37 % 1695652093 43.84 %
Base Counts Overall C 1076981589 13.92 % 126826898 3.28 % 950154691 24.57 %
Base Counts Overall G 1107639707 14.32 % 955756443 24.71 % 151883264 3.93 %
Base Counts Overall T 2694856902 34.84 % 1675797547 43.33 % 1019059355 26.35 %
Base Counts Overall N 101192164 1.31 % 50471576 1.31 % 50720588 1.31 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate NA
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 44914690



Mapping Quality

Mapping Quality Histogram
K011722_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K011722_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K011722_1894664_2