/EXTERNAL BLUEPRINT/mapping_coverage/K011722_1_lane_gembs
BACK
SAMPLE K011722_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
84284993 |
100% |
5822723297 |
100% |
| Mapped |
83327492 |
98.86 % |
5749953221 |
98.75 % |
| Passed |
50634897 |
60.08 % |
3265316001 |
56.08 % |
| NotPassed |
32692595 |
38.79 % |
2484637220 |
42.67 % |
| |
|
|
|
|
| LowMAPQ |
19825704 |
23.52 % |
1506753504 |
25.88 % |
| MateUnmapped |
957501 |
1.14 % |
72770076 |
1.25 % |
| Duplicate |
11959553 |
14.19 % |
908926028 |
15.61 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
3038 |
0.00 % |
230888 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
904300 |
1.07 % |
68726800 |
1.18 % |
| Unmapped |
957501 |
1.14 % |
72770076 |
1.25 % |
Base Level Counts
| Bases |
# |
% |
| Total |
3646924980 |
100% |
| Passed |
2951725287 |
80.94 % |
| Trimmed |
212264081 |
5.82 % |
| Clipped |
9531290 |
0.26 % |
| Overlapping |
372077689 |
10.20 % |
| LowQuality |
101326633 |
2.78 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |