/EXTERNAL BLUEPRINT/methylation/K011722_1_lane_gembs

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SAMPLE K011722_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 17453653 36006 0.21 %
NonRefCpG 894179 88 0.01 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K011722_1_lane_gembs_coverage_refCpG.png ./IMG//K011722_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K011722_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K011722_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K011722_1_lane_gembs_quality_refcpg.png ./IMG//K011722_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K011722_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 3484207 15.39 % 2942 3.13 % 281122 26.69 % 42 8.57 %
Intermediate (0.3-0.7) 7932834 35.04 % 16948 18.02 % 393631 37.37 % 105 21.37 %
Methylated (0.7-1) 11221033 49.57 % 74176 78.85 % 378595 35.94 % 346 70.06 %
Median Methylation 0.690 0.870 0.560 0.840