/EXTERNAL BLUEPRINT/K011723_1_lane_gembs

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SAMPLE K011723_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 129775160 100.00 % 64887580 100.00 % 64887580 100.00 %
General Reads 123784173 95.38 % 62171276 95.81 % 61612897 94.95 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 5990987 4.62 % 2716304 4.19 % 3274683 5.05 %
Bisulfite_reads C2T 64036893 49.34 % 32155416 49.56 % 31881477 49.13 %
Bisulfite_reads G2A 59747280 46.04 % 30015860 46.26 % 29731420 45.82 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 47059811
Average Unique 72.53 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 3550829066 35.53 % 1369044161 27.40 % 2181784905 43.67 %
Base Counts Overall C 1396729972 13.98 % 176071314 3.52 % 1220658658 24.43 %
Base Counts Overall G 1436826876 14.38 % 1229977234 24.62 % 206849642 4.14 %
Base Counts Overall T 3476425720 34.79 % 2155052969 43.13 % 1321372751 26.45 %
Base Counts Overall N 131875686 1.32 % 66197982 1.32 % 65677704 1.31 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate NA
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 57752074



Mapping Quality

Mapping Quality Histogram
K011723_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K011723_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K011723_1894665_2