/EXTERNAL BLUEPRINT/mapping_coverage/K011723_1_lane_gembs
BACK
SAMPLE K011723_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
102729319 |
100% |
7161497833 |
100% |
| Mapped |
101576488 |
98.88 % |
7073882677 |
98.78 % |
| Passed |
54094006 |
52.66 % |
3465214045 |
48.39 % |
| NotPassed |
47482482 |
46.22 % |
3608668632 |
50.39 % |
| |
|
|
|
|
| LowMAPQ |
25256504 |
24.59 % |
1919494304 |
26.80 % |
| MateUnmapped |
1152831 |
1.12 % |
87615156 |
1.22 % |
| Duplicate |
21101236 |
20.54 % |
1603693936 |
22.39 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
4084 |
0.00 % |
310384 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
1120658 |
1.09 % |
85170008 |
1.19 % |
| Unmapped |
1152831 |
1.12 % |
87615156 |
1.22 % |
Base Level Counts
| Bases |
# |
% |
| Total |
3883239532 |
100% |
| Passed |
3155947980 |
81.27 % |
| Trimmed |
226514288 |
5.83 % |
| Clipped |
10698917 |
0.28 % |
| Overlapping |
407326570 |
10.49 % |
| LowQuality |
82751777 |
2.13 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |