/EXTERNAL BLUEPRINT/methylation/K011723_1_lane_gembs

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SAMPLE K011723_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 17920590 53032 0.30 %
NonRefCpG 860970 149 0.02 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K011723_1_lane_gembs_coverage_refCpG.png ./IMG//K011723_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K011723_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K011723_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K011723_1_lane_gembs_quality_refcpg.png ./IMG//K011723_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K011723_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 3566124 15.22 % 4324 3.19 % 277056 27.10 % 68 8.55 %
Intermediate (0.3-0.7) 8154623 34.81 % 24261 17.88 % 380120 37.18 % 173 21.73 %
Methylated (0.7-1) 11702872 49.96 % 107118 78.94 % 365212 35.72 % 557 69.72 %
Median Methylation 0.690 0.870 0.550 0.830