/EXTERNAL BLUEPRINT/mapping_coverage/K011724_1_lane_gembs
BACK
SAMPLE K011724_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
81740004 |
100% |
5637929072 |
100% |
| Mapped |
80787597 |
98.83 % |
5565546140 |
98.72 % |
| Passed |
50369314 |
61.62 % |
3253756632 |
57.71 % |
| NotPassed |
30418283 |
37.21 % |
2311789508 |
41.00 % |
| |
|
|
|
|
| LowMAPQ |
18545308 |
22.69 % |
1409443408 |
25.00 % |
| MateUnmapped |
952407 |
1.17 % |
72382932 |
1.28 % |
| Duplicate |
10908802 |
13.35 % |
829068952 |
14.71 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
2656 |
0.00 % |
201856 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
961517 |
1.18 % |
73075292 |
1.30 % |
| Unmapped |
952407 |
1.17 % |
72382932 |
1.28 % |
Base Level Counts
| Bases |
# |
% |
| Total |
3626371464 |
100% |
| Passed |
2855008876 |
78.73 % |
| Trimmed |
210452357 |
5.80 % |
| Clipped |
9205969 |
0.25 % |
| Overlapping |
363408863 |
10.02 % |
| LowQuality |
188295399 |
5.19 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |