/EXTERNAL BLUEPRINT/methylation/K011724_1_lane_gembs

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SAMPLE K011724_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 17167909 29172 0.17 %
NonRefCpG 1002715 70 0.01 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K011724_1_lane_gembs_coverage_refCpG.png ./IMG//K011724_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K011724_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K011724_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K011724_1_lane_gembs_quality_refcpg.png ./IMG//K011724_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K011724_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 3319835 15.01 % 2218 2.86 % 289172 24.89 % 36 8.91 %
Intermediate (0.3-0.7) 7740122 35.00 % 13576 17.51 % 435506 37.48 % 86 20.85 %
Methylated (0.7-1) 11052614 49.98 % 61753 79.63 % 437336 37.64 % 290 70.24 %
Median Methylation 0.690 0.870 0.580 0.840