/EXTERNAL BLUEPRINT/mapping_coverage/K010380_K011765_32libs_32_lane_gembs
BACK
SAMPLE K010380_K011765_32libs_32_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
465026265 |
100% |
33571864567 |
100% |
| Mapped |
453705352 |
97.57 % |
32718053706 |
97.46 % |
| Passed |
207780123 |
44.68 % |
14146844316 |
42.14 % |
| NotPassed |
245925229 |
52.88 % |
18571209390 |
55.32 % |
| |
|
|
|
|
| LowMAPQ |
114853782 |
24.70 % |
8668596290 |
25.82 % |
| MateUnmapped |
11320913 |
2.43 % |
853810861 |
2.54 % |
| Duplicate |
124357351 |
26.74 % |
9396227717 |
27.99 % |
| BadOrientation |
16 |
0.00 % |
1210 |
0.00 % |
| LargeInsertSize |
486194 |
0.10 % |
36757632 |
0.11 % |
| |
|
|
|
|
| NotCorrectlyAligned |
6227886 |
1.34 % |
469626541 |
1.40 % |
| Unmapped |
11320913 |
2.43 % |
853810861 |
2.54 % |
Base Level Counts
| Bases |
# |
% |
| Total |
15209131393 |
100% |
| Passed |
12537265384 |
82.43 % |
| Trimmed |
917051371 |
6.03 % |
| Clipped |
53096414 |
0.35 % |
| Overlapping |
1009190663 |
6.64 % |
| LowQuality |
692527561 |
4.55 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |