/EXTERNAL BLUEPRINT/K011727_K011729_K011730_K011731_K011732_K011733_K011734_K011735_K011736_K011766_K011767_11_lane_gembs/EXTERNAL-K011727_1894669_2
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SAMPLE K011727_K011729_K011730_K011731_K011732_K011733_K011734_K011735_K011736_K011766_K011767_11_lane_gembs LANE EXTERNAL-K011727_1894669_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 125523650 | 100.00 % | 62761825 | 100.00 % | 62761825 | 100.00 % |
| General Reads | 121200673 | 96.56 % | 60956646 | 97.12 % | 60244027 | 95.99 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 2 | 0.00 % | 1 | 0.00 % | 1 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 4322975 | 3.44 % | 1805178 | 2.88 % | 2517797 | 4.01 % |
| Bisulfite_reads C2T | 62827042 | 50.05 % | 31592022 | 50.34 % | 31235020 | 49.77 % |
| Bisulfite_reads G2A | 58373633 | 46.50 % | 29364625 | 46.79 % | 29009008 | 46.22 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 46418817 |
| Average Unique | 73.96 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 3479918254 | 36.48 % | 1334977501 | 27.99 % | 2144940753 | 44.97 % |
| Base Counts Overall C | 1244979177 | 13.05 % | 120288032 | 2.52 % | 1124691145 | 23.58 % |
| Base Counts Overall G | 1294157680 | 13.57 % | 1152217912 | 24.16 % | 141939768 | 2.98 % |
| Base Counts Overall T | 3389706539 | 35.53 % | 2098914439 | 44.00 % | 1290792100 | 27.06 % |
| Base Counts Overall N | 131035750 | 1.37 % | 63500816 | 1.33 % | 67534934 | 1.42 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 57718291 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 75 | 62761825 |
| 75 | 62761825 |
Insert Size Plot
| Insert Size Histogram |
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