/EXTERNAL BLUEPRINT/K011727_K011729_K011730_K011731_K011732_K011733_K011734_K011735_K011736_K011766_K011767_11_lane_gembs/EXTERNAL-K011731_1894673_2
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SAMPLE K011727_K011729_K011730_K011731_K011732_K011733_K011734_K011735_K011736_K011766_K011767_11_lane_gembs LANE EXTERNAL-K011731_1894673_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 23179770 | 100.00 % | 11589885 | 100.00 % | 11589885 | 100.00 % |
| General Reads | 10186966 | 43.95 % | 5129705 | 44.26 % | 5057261 | 43.64 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 12992804 | 56.05 % | 6460180 | 55.74 % | 6532624 | 56.36 % |
| Bisulfite_reads C2T | 5267655 | 22.73 % | 2652192 | 22.88 % | 2615463 | 22.57 % |
| Bisulfite_reads G2A | 4919311 | 21.22 % | 2477513 | 21.38 % | 2441798 | 21.07 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 3894085 |
| Average Unique | 33.60 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 551389950 | 31.30 % | 252498512 | 28.67 % | 298891438 | 33.93 % |
| Base Counts Overall C | 310054278 | 17.60 % | 122928162 | 13.96 % | 187126116 | 21.24 % |
| Base Counts Overall G | 322530225 | 18.31 % | 192871954 | 21.90 % | 129658271 | 14.72 % |
| Base Counts Overall T | 553491857 | 31.42 % | 300804096 | 34.15 % | 252687761 | 28.69 % |
| Base Counts Overall N | 24196210 | 1.37 % | 11728536 | 1.33 % | 12467674 | 1.42 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 4853265 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 75 | 11589885 |
| 75 | 11589885 |
Insert Size Plot
| Insert Size Histogram |
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