/EXTERNAL BLUEPRINT/mapping_coverage/K011727_K011729_K011730_K011731_K011732_K011733_K011734_K011735_K011736_K011766_K011767_11_lane_gembs
BACK
SAMPLE K011727_K011729_K011730_K011731_K011732_K011733_K011734_K011735_K011736_K011766_K011767_11_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
264314144 |
100% |
18782654381 |
100% |
| Mapped |
260223869 |
98.45 % |
18475883756 |
98.37 % |
| Passed |
140696636 |
53.23 % |
9511341281 |
50.64 % |
| NotPassed |
119527233 |
45.22 % |
8964542475 |
47.73 % |
| |
|
|
|
|
| LowMAPQ |
59819658 |
22.63 % |
4486474350 |
23.89 % |
| MateUnmapped |
4090275 |
1.55 % |
306770625 |
1.63 % |
| Duplicate |
56363854 |
21.32 % |
4227289050 |
22.51 % |
| BadOrientation |
4 |
0.00 % |
300 |
0.00 % |
| LargeInsertSize |
20496 |
0.01 % |
1537200 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
3323221 |
1.26 % |
249241575 |
1.33 % |
| Unmapped |
4090275 |
1.55 % |
306770625 |
1.63 % |
Base Level Counts
| Bases |
# |
% |
| Total |
10155063600 |
100% |
| Passed |
8511919145 |
83.82 % |
| Trimmed |
616532296 |
6.07 % |
| Clipped |
31289095 |
0.31 % |
| Overlapping |
612433224 |
6.03 % |
| LowQuality |
382889840 |
3.77 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |