/EXTERNAL BLUEPRINT/methylation/K011727_K011729_K011730_K011731_K011732_K011733_K011734_K011735_K011736_K011766_K011767_11_lane_gembs
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SAMPLE K011727_K011729_K011730_K011731_K011732_K011733_K011734_K011735_K011736_K011766_K011767_11_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
23282278 |
1598701 |
6.87 % |
| NonRefCpG |
753506 |
6430 |
0.85 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
4810643 |
13.02 % |
197714 |
4.98 % |
338845 |
31.59 % |
2494 |
9.78 % |
| Intermediate (0.3-0.7) |
10989129 |
29.73 % |
685123 |
17.26 % |
369369 |
34.43 % |
5388 |
21.13 % |
| Methylated (0.7-1) |
21160998 |
57.25 % |
3086691 |
77.76 % |
364472 |
33.98 % |
17623 |
69.09 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.750 |
|
0.870 |
|
0.520 |
|
0.840 |
|