/EXTERNAL BLUEPRINT/mapping_coverage/K010391_K011797_30libs_30_lane_gembs
BACK
SAMPLE K010391_K011797_30libs_30_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
519468891 |
100% |
37745463020 |
100% |
| Mapped |
507618206 |
97.72 % |
36851264445 |
97.63 % |
| Passed |
223187472 |
42.96 % |
15357951472 |
40.69 % |
| NotPassed |
284430734 |
54.75 % |
21493312973 |
56.94 % |
| |
|
|
|
|
| LowMAPQ |
123398938 |
23.75 % |
9318502992 |
24.69 % |
| MateUnmapped |
11850685 |
2.28 % |
894198575 |
2.37 % |
| Duplicate |
152909633 |
29.44 % |
11561514466 |
30.63 % |
| BadOrientation |
8 |
0.00 % |
602 |
0.00 % |
| LargeInsertSize |
1148230 |
0.22 % |
87129340 |
0.23 % |
| |
|
|
|
|
| NotCorrectlyAligned |
6973925 |
1.34 % |
526165573 |
1.39 % |
| Unmapped |
11850685 |
2.28 % |
894198575 |
2.37 % |
Base Level Counts
| Bases |
# |
% |
| Total |
16362327727 |
100% |
| Passed |
13696019675 |
83.70 % |
| Trimmed |
989206530 |
6.05 % |
| Clipped |
58419190 |
0.36 % |
| Overlapping |
945957065 |
5.78 % |
| LowQuality |
672725267 |
4.11 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |