/EXTERNAL BLUEPRINT/methylation/K010391_K011797_30libs_30_lane_gembs
BACK
SAMPLE K010391_K011797_30libs_30_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
24391520 |
4471658 |
18.33 % |
| NonRefCpG |
544896 |
15877 |
2.91 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
3608454 |
8.58 % |
224892 |
2.15 % |
221449 |
26.65 % |
3024 |
5.30 % |
| Intermediate (0.3-0.7) |
11485666 |
27.31 % |
1647446 |
15.78 % |
275604 |
33.17 % |
11162 |
19.56 % |
| Methylated (0.7-1) |
26957207 |
64.11 % |
8568672 |
82.07 % |
333904 |
40.18 % |
42887 |
75.14 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.800 |
|
0.880 |
|
0.590 |
|
0.860 |
|