/EXTERNAL BLUEPRINT/K011770_K011771_K011772_K011773_K011774_K011775_K011776_K011777_K011778_K011798_K011799_11_lane_gembs/EXTERNAL-K011770_1894712_2
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SAMPLE K011770_K011771_K011772_K011773_K011774_K011775_K011776_K011777_K011778_K011798_K011799_11_lane_gembs LANE EXTERNAL-K011770_1894712_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 95960172 | 100.00 % | 47980086 | 100.00 % | 47980086 | 100.00 % |
| General Reads | 90954413 | 94.78 % | 45745432 | 95.34 % | 45208981 | 94.22 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 2 | 0.00 % | 1 | 0.00 % | 1 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 5005757 | 5.22 % | 2234653 | 4.66 % | 2771104 | 5.78 % |
| Bisulfite_reads C2T | 47022710 | 49.00 % | 23646208 | 49.28 % | 23376502 | 48.72 % |
| Bisulfite_reads G2A | 43931705 | 45.78 % | 22099225 | 46.06 % | 21832480 | 45.50 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 34537456 |
| Average Unique | 71.98 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 2657080656 | 35.96 % | 1032585329 | 27.95 % | 1624495327 | 43.97 % |
| Base Counts Overall C | 1010533932 | 13.68 % | 119463179 | 3.23 % | 891070753 | 24.12 % |
| Base Counts Overall G | 1039900646 | 14.07 % | 910411219 | 24.64 % | 129489427 | 3.50 % |
| Base Counts Overall T | 2585003642 | 34.98 % | 1583823829 | 42.87 % | 1001179813 | 27.10 % |
| Base Counts Overall N | 96414368 | 1.30 % | 48183066 | 1.30 % | 48231302 | 1.31 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 42764808 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 47980086 |
| 76 | 47980086 |
Insert Size Plot
| Insert Size Histogram |
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