/EXTERNAL BLUEPRINT/K011770_K011771_K011772_K011773_K011774_K011775_K011776_K011777_K011778_K011798_K011799_11_lane_gembs/EXTERNAL-K011771_1894713_2
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SAMPLE K011770_K011771_K011772_K011773_K011774_K011775_K011776_K011777_K011778_K011798_K011799_11_lane_gembs LANE EXTERNAL-K011771_1894713_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 17355040 | 100.00 % | 8677520 | 100.00 % | 8677520 | 100.00 % |
| General Reads | 9039963 | 52.09 % | 4553921 | 52.48 % | 4486042 | 51.70 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 9 | 0.00 % | 4 | 0.00 % | 5 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 8315068 | 47.91 % | 4123595 | 47.52 % | 4191473 | 48.30 % |
| Bisulfite_reads C2T | 4657857 | 26.84 % | 2345438 | 27.03 % | 2312419 | 26.65 % |
| Bisulfite_reads G2A | 4382115 | 25.25 % | 2208487 | 25.45 % | 2173628 | 25.05 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 3450286 |
| Average Unique | 39.76 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 385983010 | 28.88 % | 185133654 | 27.71 % | 200849356 | 30.06 % |
| Base Counts Overall C | 270138699 | 20.21 % | 120230875 | 17.99 % | 149907824 | 22.44 % |
| Base Counts Overall G | 275285114 | 20.60 % | 152042144 | 22.76 % | 123242970 | 18.44 % |
| Base Counts Overall T | 387491040 | 29.00 % | 202046250 | 30.24 % | 185444790 | 27.75 % |
| Base Counts Overall N | 17440217 | 1.31 % | 8716117 | 1.30 % | 8724100 | 1.31 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 4281921 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 8677520 |
| 76 | 8677520 |
Insert Size Plot
| Insert Size Histogram |
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