/EXTERNAL BLUEPRINT/K011770_K011771_K011772_K011773_K011774_K011775_K011776_K011777_K011778_K011798_K011799_11_lane_gembs/EXTERNAL-K011773_1894715_2
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SAMPLE K011770_K011771_K011772_K011773_K011774_K011775_K011776_K011777_K011778_K011798_K011799_11_lane_gembs LANE EXTERNAL-K011773_1894715_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 16929670 | 100.00 % | 8464835 | 100.00 % | 8464835 | 100.00 % |
| General Reads | 10387951 | 61.36 % | 5229173 | 61.78 % | 5158778 | 60.94 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 4 | 0.00 % | 0 | 0.00 % | 4 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 6541715 | 38.64 % | 3235662 | 38.22 % | 3306053 | 39.06 % |
| Bisulfite_reads C2T | 5361066 | 31.67 % | 2697837 | 31.87 % | 2663229 | 31.46 % |
| Bisulfite_reads G2A | 5026889 | 29.69 % | 2531336 | 29.90 % | 2495553 | 29.48 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 4008080 |
| Average Unique | 47.35 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 388239095 | 29.78 % | 166958653 | 25.62 % | 221280442 | 33.95 % |
| Base Counts Overall C | 251407150 | 19.29 % | 89608112 | 13.75 % | 161799038 | 24.82 % |
| Base Counts Overall G | 259802886 | 19.93 % | 166074223 | 25.48 % | 93728663 | 14.38 % |
| Base Counts Overall T | 387127242 | 29.70 % | 220651303 | 33.85 % | 166475939 | 25.54 % |
| Base Counts Overall N | 17008217 | 1.30 % | 8500004 | 1.30 % | 8508213 | 1.31 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 4964627 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 8464835 |
| 76 | 8464835 |
Insert Size Plot
| Insert Size Histogram |
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