/EXTERNAL BLUEPRINT/K011770_K011771_K011772_K011773_K011774_K011775_K011776_K011777_K011778_K011798_K011799_11_lane_gembs/EXTERNAL-K011774_1894716_2
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SAMPLE K011770_K011771_K011772_K011773_K011774_K011775_K011776_K011777_K011778_K011798_K011799_11_lane_gembs LANE EXTERNAL-K011774_1894716_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 16120978 | 100.00 % | 8060489 | 100.00 % | 8060489 | 100.00 % |
| General Reads | 9864550 | 61.19 % | 4972166 | 61.69 % | 4892384 | 60.70 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 14 | 0.00 % | 4 | 0.00 % | 10 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 6256414 | 38.81 % | 3088319 | 38.31 % | 3168095 | 39.30 % |
| Bisulfite_reads C2T | 5094004 | 31.60 % | 2566731 | 31.84 % | 2527273 | 31.35 % |
| Bisulfite_reads G2A | 4770560 | 29.59 % | 2405439 | 29.84 % | 2365121 | 29.34 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 3803947 |
| Average Unique | 47.19 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 364119530 | 29.33 % | 160640549 | 25.88 % | 203478981 | 32.78 % |
| Base Counts Overall C | 245858138 | 19.81 % | 92685083 | 14.93 % | 153173055 | 24.68 % |
| Base Counts Overall G | 253059280 | 20.39 % | 157024580 | 25.30 % | 96034700 | 15.47 % |
| Base Counts Overall T | 362081795 | 29.17 % | 202213497 | 32.58 % | 159868298 | 25.76 % |
| Base Counts Overall N | 16196563 | 1.30 % | 8093944 | 1.30 % | 8102619 | 1.31 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 4710005 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 8060489 |
| 76 | 8060489 |
Insert Size Plot
| Insert Size Histogram |
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