/EXTERNAL BLUEPRINT/K011770_K011771_K011772_K011773_K011774_K011775_K011776_K011777_K011778_K011798_K011799_11_lane_gembs/EXTERNAL-K011776_1894718_2
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SAMPLE K011770_K011771_K011772_K011773_K011774_K011775_K011776_K011777_K011778_K011798_K011799_11_lane_gembs LANE EXTERNAL-K011776_1894718_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 15065356 | 100.00 % | 7532678 | 100.00 % | 7532678 | 100.00 % |
| General Reads | 8139212 | 54.03 % | 4099131 | 54.42 % | 4040081 | 53.63 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 20 | 0.00 % | 8 | 0.00 % | 12 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 6926124 | 45.97 % | 3433539 | 45.58 % | 3492585 | 46.37 % |
| Bisulfite_reads C2T | 4194870 | 27.84 % | 2111924 | 28.04 % | 2082946 | 27.65 % |
| Bisulfite_reads G2A | 3944362 | 26.18 % | 1987215 | 26.38 % | 1957147 | 25.98 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 3120694 |
| Average Unique | 41.43 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 350960074 | 30.25 % | 157498256 | 27.15 % | 193461818 | 33.35 % |
| Base Counts Overall C | 218336596 | 18.82 % | 81997512 | 14.14 % | 136339084 | 23.51 % |
| Base Counts Overall G | 225447515 | 19.43 % | 139882973 | 24.12 % | 85564542 | 14.75 % |
| Base Counts Overall T | 350152299 | 30.18 % | 193072451 | 33.29 % | 157079848 | 27.08 % |
| Base Counts Overall N | 15135928 | 1.30 % | 7565014 | 1.30 % | 7570914 | 1.31 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 3867335 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 7532678 |
| 76 | 7532678 |
Insert Size Plot
| Insert Size Histogram |
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