/EXTERNAL BLUEPRINT/K011770_K011771_K011772_K011773_K011774_K011775_K011776_K011777_K011778_K011798_K011799_11_lane_gembs/EXTERNAL-K011777_1894719_2
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SAMPLE K011770_K011771_K011772_K011773_K011774_K011775_K011776_K011777_K011778_K011798_K011799_11_lane_gembs LANE EXTERNAL-K011777_1894719_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 15902434 | 100.00 % | 7951217 | 100.00 % | 7951217 | 100.00 % |
| General Reads | 8454358 | 53.16 % | 4255918 | 53.53 % | 4198440 | 52.80 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 16 | 0.00 % | 8 | 0.00 % | 8 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 7448060 | 46.84 % | 3695291 | 46.47 % | 3752769 | 47.20 % |
| Bisulfite_reads C2T | 4358587 | 27.41 % | 2193454 | 27.59 % | 2165133 | 27.23 % |
| Bisulfite_reads G2A | 4095787 | 25.76 % | 2062472 | 25.94 % | 2033315 | 25.57 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 3279737 |
| Average Unique | 41.25 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 339182478 | 27.70 % | 163317645 | 26.68 % | 175864833 | 28.72 % |
| Base Counts Overall C | 261395782 | 21.35 % | 119913721 | 19.59 % | 141482061 | 23.11 % |
| Base Counts Overall G | 267259957 | 21.83 % | 144129093 | 23.54 % | 123130864 | 20.11 % |
| Base Counts Overall T | 340667527 | 27.82 % | 176896839 | 28.89 % | 163770688 | 26.75 % |
| Base Counts Overall N | 15981674 | 1.31 % | 7986411 | 1.30 % | 7995263 | 1.31 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 4033959 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 7951217 |
| 76 | 7951217 |
Insert Size Plot
| Insert Size Histogram |
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