/EXTERNAL BLUEPRINT/K011770_K011771_K011772_K011773_K011774_K011775_K011776_K011777_K011778_K011798_K011799_11_lane_gembs/EXTERNAL-K011778_1894720_2
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SAMPLE K011770_K011771_K011772_K011773_K011774_K011775_K011776_K011777_K011778_K011798_K011799_11_lane_gembs LANE EXTERNAL-K011778_1894720_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 15326118 | 100.00 % | 7663059 | 100.00 % | 7663059 | 100.00 % |
| General Reads | 8615777 | 56.22 % | 4339149 | 56.62 % | 4276628 | 55.81 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 19 | 0.00 % | 8 | 0.00 % | 11 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 6710322 | 43.78 % | 3323902 | 43.38 % | 3386420 | 44.19 % |
| Bisulfite_reads C2T | 4444548 | 29.00 % | 2237544 | 29.20 % | 2207004 | 28.80 % |
| Bisulfite_reads G2A | 4171248 | 27.22 % | 2101613 | 27.43 % | 2069635 | 27.01 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 3331908 |
| Average Unique | 43.48 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 335737210 | 28.45 % | 151927775 | 25.75 % | 183809435 | 31.15 % |
| Base Counts Overall C | 243435188 | 20.63 % | 97940037 | 16.60 % | 145495151 | 24.66 % |
| Base Counts Overall G | 250273435 | 21.21 % | 148836362 | 25.22 % | 101437073 | 17.19 % |
| Base Counts Overall T | 335266296 | 28.41 % | 183654753 | 31.12 % | 151611543 | 25.69 % |
| Base Counts Overall N | 15398957 | 1.30 % | 7696616 | 1.30 % | 7702341 | 1.31 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 4114300 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 7663059 |
| 76 | 7663059 |
Insert Size Plot
| Insert Size Histogram |
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