/EXTERNAL BLUEPRINT/K011770_K011771_K011772_K011773_K011774_K011775_K011776_K011777_K011778_K011798_K011799_11_lane_gembs/EXTERNAL-K011799_1894741_2
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SAMPLE K011770_K011771_K011772_K011773_K011774_K011775_K011776_K011777_K011778_K011798_K011799_11_lane_gembs LANE EXTERNAL-K011799_1894741_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 40473490 | 100.00 % | 20236745 | 100.00 % | 20236745 | 100.00 % |
| General Reads | 31656992 | 78.22 % | 15937281 | 78.75 % | 15719711 | 77.68 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 9 | 0.00 % | 6 | 0.00 % | 3 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 8816489 | 21.78 % | 4299458 | 21.25 % | 4517031 | 22.32 % |
| Bisulfite_reads C2T | 16334291 | 40.36 % | 8221831 | 40.63 % | 8112460 | 40.09 % |
| Bisulfite_reads G2A | 15322710 | 37.86 % | 7715456 | 38.13 % | 7607254 | 37.59 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 12210700 |
| Average Unique | 60.34 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 1011908097 | 32.47 % | 422413629 | 27.11 % | 589494468 | 37.83 % |
| Base Counts Overall C | 523248166 | 16.79 % | 145018676 | 9.31 % | 378229490 | 24.27 % |
| Base Counts Overall G | 539259104 | 17.30 % | 387652072 | 24.88 % | 151607032 | 9.73 % |
| Base Counts Overall T | 1001371892 | 32.13 % | 582820580 | 37.40 % | 418551312 | 26.86 % |
| Base Counts Overall N | 40671471 | 1.31 % | 20324408 | 1.30 % | 20347063 | 1.31 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 15098647 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 20236745 |
| 76 | 20236745 |
Insert Size Plot
| Insert Size Histogram |
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