/EXTERNAL BLUEPRINT/mapping_coverage/K011770_K011771_K011772_K011773_K011774_K011775_K011776_K011777_K011778_K011798_K011799_11_lane_gembs
BACK
SAMPLE K011770_K011771_K011772_K011773_K011774_K011775_K011776_K011777_K011778_K011798_K011799_11_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
189439229 |
100% |
13331120551 |
100% |
| Mapped |
186450480 |
98.42 % |
13103975627 |
98.30 % |
| Passed |
106724455 |
56.34 % |
7044797727 |
52.84 % |
| NotPassed |
79726025 |
42.09 % |
6059177900 |
45.45 % |
| |
|
|
|
|
| LowMAPQ |
43214308 |
22.81 % |
3284287408 |
24.64 % |
| MateUnmapped |
2988749 |
1.58 % |
227144924 |
1.70 % |
| Duplicate |
33955769 |
17.92 % |
2580638444 |
19.36 % |
| BadOrientation |
8 |
0.00 % |
608 |
0.00 % |
| LargeInsertSize |
26188 |
0.01 % |
1990288 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
2529752 |
1.34 % |
192261152 |
1.44 % |
| Unmapped |
2988749 |
1.58 % |
227144924 |
1.70 % |
Base Level Counts
| Bases |
# |
% |
| Total |
7733651928 |
100% |
| Passed |
6449661607 |
83.40 % |
| Trimmed |
455460141 |
5.89 % |
| Clipped |
22693621 |
0.29 % |
| Overlapping |
666160580 |
8.61 % |
| LowQuality |
139675979 |
1.81 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |