/EXTERNAL BLUEPRINT/methylation/K011770_K011771_K011772_K011773_K011774_K011775_K011776_K011777_K011778_K011798_K011799_11_lane_gembs
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SAMPLE K011770_K011771_K011772_K011773_K011774_K011775_K011776_K011777_K011778_K011798_K011799_11_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
22109586 |
661354 |
2.99 % |
| NonRefCpG |
792609 |
1971 |
0.25 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
4368033 |
13.18 % |
63700 |
3.85 % |
319358 |
29.92 % |
894 |
9.28 % |
| Intermediate (0.3-0.7) |
10576344 |
31.91 % |
295502 |
17.85 % |
381058 |
35.70 % |
2172 |
22.53 % |
| Methylated (0.7-1) |
18204123 |
54.92 % |
1295850 |
78.30 % |
366831 |
34.37 % |
6575 |
68.19 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.730 |
|
0.870 |
|
0.530 |
|
0.830 |
|