/EXTERNAL BLUEPRINT/K011801_K011811_K011812_K011813_K011814_K011815_K011816_K011817_K011818_K011851_K011852_11_lane_gembs/EXTERNAL-K011801_1894743_2
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SAMPLE K011801_K011811_K011812_K011813_K011814_K011815_K011816_K011817_K011818_K011851_K011852_11_lane_gembs LANE EXTERNAL-K011801_1894743_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 93425596 | 100.00 % | 46712798 | 100.00 % | 46712798 | 100.00 % |
| General Reads | 86217952 | 92.29 % | 43277533 | 92.65 % | 42940419 | 91.92 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 4 | 0.00 % | 2 | 0.00 % | 2 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 7207640 | 7.71 % | 3435263 | 7.35 % | 3772377 | 8.08 % |
| Bisulfite_reads C2T | 44553992 | 47.69 % | 22359300 | 47.87 % | 22194692 | 47.51 % |
| Bisulfite_reads G2A | 41663964 | 44.60 % | 20918235 | 44.78 % | 20745729 | 44.41 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 32369364 |
| Average Unique | 69.29 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 2547186310 | 35.41 % | 992040787 | 27.58 % | 1555145523 | 43.24 % |
| Base Counts Overall C | 1017959179 | 14.15 % | 143700173 | 4.00 % | 874259006 | 24.31 % |
| Base Counts Overall G | 1046101827 | 14.54 % | 886425268 | 24.64 % | 159676559 | 4.44 % |
| Base Counts Overall T | 2487987307 | 34.59 % | 1527647721 | 42.47 % | 960339586 | 26.70 % |
| Base Counts Overall N | 94536269 | 1.31 % | 47071497 | 1.31 % | 47464772 | 1.32 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 39850783 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 46712798 |
| 76 | 46712798 |
Insert Size Plot
| Insert Size Histogram |
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