/EXTERNAL BLUEPRINT/K011801_K011811_K011812_K011813_K011814_K011815_K011816_K011817_K011818_K011851_K011852_11_lane_gembs/EXTERNAL-K011811_1894753_2
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SAMPLE K011801_K011811_K011812_K011813_K011814_K011815_K011816_K011817_K011818_K011851_K011852_11_lane_gembs LANE EXTERNAL-K011811_1894753_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 16686416 | 100.00 % | 8343208 | 100.00 % | 8343208 | 100.00 % |
| General Reads | 11202473 | 67.14 % | 5630727 | 67.49 % | 5571746 | 66.78 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 5483943 | 32.86 % | 2712481 | 32.51 % | 2771462 | 33.22 % |
| Bisulfite_reads C2T | 5777226 | 34.62 % | 2902935 | 34.79 % | 2874291 | 34.45 % |
| Bisulfite_reads G2A | 5425247 | 32.51 % | 2727792 | 32.69 % | 2697455 | 32.33 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 4243702 |
| Average Unique | 50.86 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 398718273 | 31.03 % | 172279614 | 26.82 % | 226438659 | 35.25 % |
| Base Counts Overall C | 233119539 | 18.14 % | 80525701 | 12.53 % | 152593838 | 23.75 % |
| Base Counts Overall G | 239936511 | 18.67 % | 155595256 | 24.22 % | 84341255 | 13.13 % |
| Base Counts Overall T | 396191489 | 30.84 % | 225618454 | 35.12 % | 170573035 | 26.55 % |
| Base Counts Overall N | 16888220 | 1.31 % | 8407991 | 1.31 % | 8480229 | 1.32 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 5238258 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 8343208 |
| 76 | 8343208 |
Insert Size Plot
| Insert Size Histogram |
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