/EXTERNAL BLUEPRINT/K011801_K011811_K011812_K011813_K011814_K011815_K011816_K011817_K011818_K011851_K011852_11_lane_gembs/EXTERNAL-K011812_1894754_2
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SAMPLE K011801_K011811_K011812_K011813_K011814_K011815_K011816_K011817_K011818_K011851_K011852_11_lane_gembs LANE EXTERNAL-K011812_1894754_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 16357834 | 100.00 % | 8178917 | 100.00 % | 8178917 | 100.00 % |
| General Reads | 12369841 | 75.62 % | 6214317 | 75.98 % | 6155524 | 75.26 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 6 | 0.00 % | 3 | 0.00 % | 3 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 3987987 | 24.38 % | 1964597 | 24.02 % | 2023390 | 24.74 % |
| Bisulfite_reads C2T | 6383008 | 39.02 % | 3205688 | 39.19 % | 3177320 | 38.85 % |
| Bisulfite_reads G2A | 5986839 | 36.60 % | 3008632 | 36.79 % | 2978207 | 36.41 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 4800874 |
| Average Unique | 58.70 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 398452343 | 31.63 % | 166814934 | 26.49 % | 231637409 | 36.78 % |
| Base Counts Overall C | 220463415 | 17.50 % | 71372682 | 11.33 % | 149090733 | 23.67 % |
| Base Counts Overall G | 226111555 | 17.95 % | 151293055 | 24.02 % | 74818500 | 11.88 % |
| Base Counts Overall T | 397969597 | 31.60 % | 232052877 | 36.85 % | 165916720 | 26.35 % |
| Base Counts Overall N | 16556308 | 1.31 % | 8243061 | 1.31 % | 8313247 | 1.32 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 5888125 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 8178917 |
| 76 | 8178917 |
Insert Size Plot
| Insert Size Histogram |
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