/EXTERNAL BLUEPRINT/K011801_K011811_K011812_K011813_K011814_K011815_K011816_K011817_K011818_K011851_K011852_11_lane_gembs/EXTERNAL-K011813_1894755_2
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SAMPLE K011801_K011811_K011812_K011813_K011814_K011815_K011816_K011817_K011818_K011851_K011852_11_lane_gembs LANE EXTERNAL-K011813_1894755_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 17940922 | 100.00 % | 8970461 | 100.00 % | 8970461 | 100.00 % |
| General Reads | 12825853 | 71.49 % | 6447124 | 71.87 % | 6378729 | 71.11 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 22 | 0.00 % | 11 | 0.00 % | 11 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 5115047 | 28.51 % | 2523326 | 28.13 % | 2591721 | 28.89 % |
| Bisulfite_reads C2T | 6614056 | 36.87 % | 3323817 | 37.05 % | 3290239 | 36.68 % |
| Bisulfite_reads G2A | 6211819 | 34.62 % | 3123318 | 34.82 % | 3088501 | 34.43 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 4919989 |
| Average Unique | 54.85 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 423209529 | 30.64 % | 187961011 | 27.21 % | 235248518 | 34.06 % |
| Base Counts Overall C | 255661707 | 18.51 % | 96594213 | 13.98 % | 159067494 | 23.03 % |
| Base Counts Overall G | 261816239 | 18.95 % | 161506236 | 23.38 % | 100310003 | 14.52 % |
| Base Counts Overall T | 422610061 | 30.59 % | 235624703 | 34.11 % | 186985358 | 27.07 % |
| Base Counts Overall N | 18153458 | 1.31 % | 9039334 | 1.31 % | 9114124 | 1.32 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 6051906 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 8970461 |
| 76 | 8970461 |
Insert Size Plot
| Insert Size Histogram |
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