/EXTERNAL BLUEPRINT/K011801_K011811_K011812_K011813_K011814_K011815_K011816_K011817_K011818_K011851_K011852_11_lane_gembs/EXTERNAL-K011814_1894756_2
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SAMPLE K011801_K011811_K011812_K011813_K011814_K011815_K011816_K011817_K011818_K011851_K011852_11_lane_gembs LANE EXTERNAL-K011814_1894756_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 19905546 | 100.00 % | 9952773 | 100.00 % | 9952773 | 100.00 % |
| General Reads | 13065219 | 65.64 % | 6560811 | 65.92 % | 6504408 | 65.35 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 13 | 0.00 % | 7 | 0.00 % | 6 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 6840314 | 34.36 % | 3391955 | 34.08 % | 3448359 | 34.65 % |
| Bisulfite_reads C2T | 6741602 | 33.87 % | 3384198 | 34.00 % | 3357404 | 33.73 % |
| Bisulfite_reads G2A | 6323630 | 31.77 % | 3176620 | 31.92 % | 3147010 | 31.62 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 4996290 |
| Average Unique | 50.20 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 471363047 | 30.75 % | 203399237 | 26.54 % | 267963810 | 34.97 % |
| Base Counts Overall C | 282043929 | 18.40 % | 101248373 | 13.21 % | 180795556 | 23.59 % |
| Base Counts Overall G | 287886367 | 18.78 % | 182975819 | 23.88 % | 104910548 | 13.69 % |
| Base Counts Overall T | 471238284 | 30.75 % | 268694035 | 35.06 % | 202544249 | 26.43 % |
| Base Counts Overall N | 20195415 | 1.32 % | 10046057 | 1.31 % | 10149358 | 1.32 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 6152506 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 9952773 |
| 76 | 9952773 |
Insert Size Plot
| Insert Size Histogram |
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