/EXTERNAL BLUEPRINT/K011801_K011811_K011812_K011813_K011814_K011815_K011816_K011817_K011818_K011851_K011852_11_lane_gembs/EXTERNAL-K011815_1894757_2
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SAMPLE K011801_K011811_K011812_K011813_K011814_K011815_K011816_K011817_K011818_K011851_K011852_11_lane_gembs LANE EXTERNAL-K011815_1894757_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 17938376 | 100.00 % | 8969188 | 100.00 % | 8969188 | 100.00 % |
| General Reads | 11495972 | 64.09 % | 5772686 | 64.36 % | 5723286 | 63.81 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 7 | 0.00 % | 4 | 0.00 % | 3 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 6442397 | 35.91 % | 3196498 | 35.64 % | 3245899 | 36.19 % |
| Bisulfite_reads C2T | 5938960 | 33.11 % | 2981547 | 33.24 % | 2957413 | 32.97 % |
| Bisulfite_reads G2A | 5557019 | 30.98 % | 2791143 | 31.12 % | 2765876 | 30.84 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 4397090 |
| Average Unique | 49.02 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 426249280 | 30.86 % | 179360371 | 25.97 % | 246888909 | 35.75 % |
| Base Counts Overall C | 252972515 | 18.31 % | 85710291 | 12.41 % | 167262224 | 24.22 % |
| Base Counts Overall G | 259054050 | 18.75 % | 169442479 | 24.53 % | 89611571 | 12.98 % |
| Base Counts Overall T | 424788378 | 30.75 % | 247065377 | 35.77 % | 177723001 | 25.73 % |
| Base Counts Overall N | 18190729 | 1.32 % | 9048958 | 1.31 % | 9141771 | 1.32 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 5412731 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 8969188 |
| 76 | 8969188 |
Insert Size Plot
| Insert Size Histogram |
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